qualToMeanQ: calculate mean Phred score from an ASCII encoded phred string
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
Description
FASTQ and BAM store per base qualities as an ASCII string. Accessory methods
in e.g. ShortRead allow for a sum of the numeric encoded scores; this is not
corrected for the log/linear so scores are synthetically boosted
- this simple method performs mean on the character level data ...
Usage
1
qualToMeanQ(qstr)
Arguments
qstr
is an ASCII encoded Phred quality score
Value
mean phred scaled q-value
Examples
1
qualToMeanQ('ABCDEF')
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
Description
FASTQ and BAM store per base qualities as an ASCII string. Accessory methods in e.g. ShortRead allow for a sum of the numeric encoded scores; this is not corrected for the log/linear so scores are synthetically boosted - this simple method performs mean on the character level data ...
Usage
1 | qualToMeanQ(qstr)
|
Arguments
qstr |
is an ASCII encoded Phred quality score |
Value
mean phred scaled q-value
Examples
1 | qualToMeanQ('ABCDEF')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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