snifflesKaryogram: prepare karyogram of annotated SVs
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
Description
This method will prepare a karyogram of annotated SVs against the genome
reference
Usage
1
snifflesKaryogram(vcfFile, demoChr = NULL)
Arguments
vcfFile
is the path to the vcfFile to plot
demoChr
defines a dummy chromosome for plotting
Value
a ggbio/ggplot2 graph
Examples
1
2
3
4
vcfFile <- system.file("extdata", "GM24385.nf7.chr20.vcf",
package = "nanopoRe")
# a reference genome should really be defined with setReferenceGenome
snifflesKaryogram(vcfFile, demoChr=20)
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
Description
This method will prepare a karyogram of annotated SVs against the genome reference
Usage
1 | snifflesKaryogram(vcfFile, demoChr = NULL)
|
Arguments
vcfFile |
is the path to the vcfFile to plot |
demoChr |
defines a dummy chromosome for plotting |
Value
a ggbio/ggplot2 graph
Examples
1 2 3 4 | vcfFile <- system.file("extdata", "GM24385.nf7.chr20.vcf",
package = "nanopoRe")
# a reference genome should really be defined with setReferenceGenome
snifflesKaryogram(vcfFile, demoChr=20)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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