testBam: extract content from a BAM file
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
Description
This method will extract a block of BAM content from a given BAM file
Usage
1
testBam(bamFile, yieldSize = 100L)
Arguments
bamFile
is the location to the BAM file to parse
yieldSize
is the number of mapping observations to extract
Value
list of summary observations
Examples
1
2
3
4
5
# define the path to a BAM file
demoBam <- system.file("extdata",
"Ecoli_zymo_R10_filt_subs.bam",
package = "nanopoRe")
bamdata <- testBam(demoBam, 10)
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
Description
This method will extract a block of BAM content from a given BAM file
Usage
1 | testBam(bamFile, yieldSize = 100L)
|
Arguments
bamFile |
is the location to the BAM file to parse |
yieldSize |
is the number of mapping observations to extract |
Value
list of summary observations
Examples
1 2 3 4 5 | # define the path to a BAM file
demoBam <- system.file("extdata",
"Ecoli_zymo_R10_filt_subs.bam",
package = "nanopoRe")
bamdata <- testBam(demoBam, 10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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