Files in samuel-marsh/scCustomize
Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/new-feature-request-enhancement.md
.github/workflows/R-CMD-check.yaml
.gitignore
CRAN-SUBMISSION
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md R/Color_Palettes.R R/Data.R R/Deprecated.R R/Generics.R R/Internal_Utilities.R R/LIGER_Internal_Utilities.R R/LIGER_Plotting.R R/LIGER_Utilities.R R/Object_Conversion.R R/Object_Utilities.R R/Plotting_Nebulosa.R R/Plotting_QC_Seq_10X.R R/Plotting_QC_Seurat.R R/Plotting_Seurat.R R/Plotting_Seurat_Iterative.R R/Plotting_Statistics.R R/Plotting_Utilities.R R/QC_Utilities_Seurat.R R/Read_&_Write_Data.R R/Reexports.R R/Statistics.R R/Utilities.R
R/sysdata.rda
R/zzz.R README.md
_pkgdown.yml
cran-comments.md data-raw/Create_Ensembl_ID_Mito_Ribo_Hemo_Lists_scCuztomize.R data-raw/Create_Ensembl_IEG_Gene_Lists_scCustomize.R data-raw/Create_msigdb_Gene_Lists_scCustomize.R
data/ensembl_hemo_id.rda
data/ensembl_ieg_list.rda
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docs/reference/Subset_LIGER.html
docs/reference/Top_Genes_Factor.html
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docs/reference/as.LIGER.list.html
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docs/reference/as.anndata.html
docs/reference/as.anndata.liger.html
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docs/reference/ensembl_hemo_id.html
docs/reference/ensembl_ieg_list.html
docs/reference/ensembl_mito_id.html
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docs/reference/figures/assets/Iterate_named_plots.png
docs/reference/figures/assets/Read10X_GEO.png
docs/reference/figures/assets/annotation_info.png
docs/reference/figures/assets/delim_default.png
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docs/sitemap.xml
index.md
inst/pkgdown.yml
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man/figures/assets/Iterate_named_plots.png
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man/ieg_gene_list.Rd man/msigdb_qc_ensembl_list.Rd man/msigdb_qc_gene_list.Rd man/plotFactors_scCustom.Rd man/reexports.Rd man/scCustomize-package.Rd man/scCustomize_Palette.Rd man/seq_zeros.Rd man/theme_ggprism_mod.Rd man/viridis_shortcut.Rd
scCustomize.Rproj
vignettes/.gitignore
vignettes/articles/Cell_Bender_Functions.Rmd vignettes/articles/Color_Palettes.Rmd vignettes/articles/FAQ.Rmd vignettes/articles/Gene_Expression_Plotting.Rmd vignettes/articles/Helpers_and_Utilities.Rmd vignettes/articles/Installation.Rmd vignettes/articles/Iterative_Plotting.Rmd vignettes/articles/LIGER_Functions.Rmd vignettes/articles/Markers_and_Cluster_Annotation.Rmd vignettes/articles/Misc_Functions.Rmd vignettes/articles/Object_Conversion.Rmd vignettes/articles/Object_QC_Functions.Rmd vignettes/articles/QC_Plots.Rmd vignettes/articles/Read_and_Write_Functions.Rmd vignettes/articles/Sequencing_QC_Plots.Rmd vignettes/articles/Spatial_Plotting.Rmd vignettes/articles/Statistics.Rmd vignettes/articles/Update_Gene_Symbols.Rmd
samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.