bimbam_impute: Impute genotypes with BIMBAM
In surh/HMVAR: Human Microbiome Variant Analysis in R

Impute genotypes with BIMBAM

bimbam_impute(
  geno_file,
  pheno_file,
  pos_file,
  bimbam = "bimbam",
  outdir = "imputed/",
  em_runs = 10,
  em_steps = 20,
  em_clusters = 15,
  prefix = "imputed"
)

`geno_file`	Path to mean genotype file. See BIMBAM docummentation for details.
`pheno_file`	Path to phenotype file. See BIMBAM docummentation for details.
`pos_file`	Path to SNP position file. See BIMBAM docummentation for details.
`bimbam`	BIMBAM executable.
`outdir`	Output directory.
`em_runs`	Number of EM algorithm runs.
`em_steps`	Steps of each EM run.
`em_clusters`	Number of clusters in EM algorithm.
`prefix`	Prefix of all output files