Files in surh/HMVAR
Human Microbiome Variant Analysis in R

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/calculate_prevalence.r R/genome_wide_ni.r R/input.r R/metawas.r R/midas_data.r R/mktest.r R/phylotype2rdp.r R/pval_qqplot.r R/utils.r README.md
docs/LICENSE-text.html
docs/authors.html
docs/docsearch.css
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
inst/bin/benchmark_imputation.r inst/bin/calculate_neutrality_index.r inst/bin/check_mk_pvals.r inst/bin/genome_metawas.r inst/bin/mktest.r inst/bin/processing/cor.r inst/bin/processing/get_selected_mktest.r inst/bin/processing/plot_genes.r inst/bin/subset_snps.r inst/bin/varsites.r inst/scripts/Fst.r inst/scripts/analyze_all_pvals.r inst/scripts/analyze_ratio.r inst/scripts/analyze_snps.r inst/scripts/bugwas.r inst/scripts/check_pvals.r inst/scripts/functions.r
inst/scripts/genomewide_ni.txt
inst/scripts/get_all_mktest_genes.r inst/scripts/go_enrichment.r inst/scripts/go_enrichments.r inst/scripts/hmp16s_1.hmmcp_prevalence.r inst/scripts/hmp16s_2.hmqcp_prevalence.r inst/scripts/hmp16s_3.combine_prevalence.r inst/scripts/imputation_test_mice.r inst/scripts/lmm_vs_mktest.r inst/scripts/manhattan_type.r inst/scripts/match_snps_genes.r inst/scripts/metawas_enrichments.r inst/scripts/plot_mkres_results.r inst/scripts/plot_ni_phylo.r inst/scripts/plot_vwma_pvals.r inst/scripts/plots_for_labmtg.r inst/scripts/process_go_enrich_pvals.r inst/scripts/test_signal_peptide.r man/benchmark_imputation.Rd man/bimbam_impute.Rd man/calculate_prevalence.Rd man/check_pvals_in_file.Rd man/check_pvalues.Rd man/determine_snp_dist.Rd man/determine_snp_effect.Rd man/format_input.Rd man/format_input_hmqcp.Rd man/gemma_kinship.Rd man/gemma_lmm.Rd man/genome_wide_ni.Rd man/get_mk_results_files.Rd man/get_site_dist.Rd man/mice_impute.Rd man/midas_mktest.Rd man/midas_to_bimbam.Rd man/mkvalues.Rd man/phylotype2rdp.Rd man/phylotype2rdp2.Rd man/pval_qqplot.Rd man/read_midas_abun.Rd man/read_midas_data.Rd man/run_command.Rd man/select_samples_from_abun.Rd man/tidy_mice.Rd
surh/HMVAR documentation built on March 23, 2019, 12:11 a.m.