inst/toy_example/README.md
In surh/HMVAR: Human Microbiome Variant Analysis in R
This directory contains some artificial data. Its purpose is to serve
as a toy example for the HMVAR package.
The directory merged.snps represents the hypothetical results
of calling bi-allelic SNPs on one genome, across 10 samples, from two
groups. The format is the same as the one produced by MIDAS after
calling midas_merge.py snps.
The file map.txt associates each hypothetical sample with
one of two groups.
The directory expected contains the expected results from
different functions and analysis.
At some point, the data here might also be included as R data objects,
however, it is included as flat files in order to fully test the I/O
capabilities of HMVAR.
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
This directory contains some artificial data. Its purpose is to serve as a toy example for the HMVAR package.
The directory merged.snps represents the hypothetical results
of calling bi-allelic SNPs on one genome, across 10 samples, from two
groups. The format is the same as the one produced by MIDAS after
calling midas_merge.py snps.
The file map.txt associates each hypothetical sample with one of two groups.
The directory expected contains the expected results from different functions and analysis.
At some point, the data here might also be included as R data objects, however, it is included as flat files in order to fully test the I/O capabilities of HMVAR.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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