mktest: McDonald-Kreitman test
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Value
Description
McDonald-Kreitman test
Usage
1
mktest(alleles, info, map)
Arguments
alleles
site x sample alleles table. First column must be
"site_id"
info
Table with information about SNVs. Must include columns
"site_id", "locus_type", "gene_id" and "snp_effect".
map
Mapping file. must have columns "sample" and "group"
Value
A tibble
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Value
Description
McDonald-Kreitman test
Usage
1 | mktest(alleles, info, map)
|
Arguments
alleles |
site x sample alleles table. First column must be "site_id" |
info |
Table with information about SNVs. Must include columns "site_id", "locus_type", "gene_id" and "snp_effect". |
map |
Mapping file. must have columns "sample" and "group" |
Value
A tibble
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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