gene_midas_data: Get all MIDAS data from a gene
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Value
Description
Returns a list similar to the one by read_midas_data but
only with sites from a given gene.
Usage
1
gene_midas_data(Dat, gene, depth_thres = 1, freq_thres = 0.5)
Arguments
Dat
A list. See output from read_midas_data
gene
Name of the gene to be extracted, must exist in
'gene_id' column of the 'info' element from Dat.
depth_thres
Minimum depth trheshold.
freq_thres
Freq threshold.
Value
A tibble that results of merging the info, dat and freq elements
of Dat. Plus allele assignments.
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Value
Description
Returns a list similar to the one by read_midas_data but only with sites from a given gene.
Usage
1 | gene_midas_data(Dat, gene, depth_thres = 1, freq_thres = 0.5)
|
Arguments
Dat |
A list. See output from read_midas_data |
gene |
Name of the gene to be extracted, must exist in 'gene_id' column of the 'info' element from Dat. |
depth_thres |
Minimum depth trheshold. |
freq_thres |
Freq threshold. |
Value
A tibble that results of merging the info, dat and freq elements of Dat. Plus allele assignments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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