gemma_kinship: Calculate kinship matrix with GEMMA
In surh/HMVAR: Human Microbiome Variant Analysis in R

Calculate kinship matrix with GEMMA

gemma_kinship(
  geno_file,
  pheno_file,
  snp_file,
  gemma = "gemma",
  outdir = "kinship/",
  prefix = "kinship"
)

`geno_file`	Mean genotype file in BIMBAM format. See GEMMA manual for details.
`pheno_file`	Phenotype file in BIMBAM format. See GEMMA manual for details.
`snp_file`	SNP annotation file in BIMBAM format. See GEMMA manual for details.
`gemma`	GEMMA executable.
`outdir`	directory to write output.
`prefix`	Prefix for output filenames.