check_pvalues: Check p-values
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Value
Author(s)
Description
Takes a pair of vectors of estimates and their p-values
for some hypothesis test, and uses qvalue methods from
storey and Tibshirani to estimate the number of True
Negatives (pi0) and creat a p-value histogram. It doesn't
consider cases where the estimate is undefined.
Usage
1
check_pvalues(estimates, pvals, plot = TRUE)
Arguments
estimates
numeric verctor of estimates
pvals
numeric vector of p-values
plot
plot or not
Value
a list with elements pi0 with the point estimate
of pi0 and p1 which is a ggplot2 plot or NULL in case parameter
plot was FALSE
Author(s)
Sur Herrera Paredes
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Value Author(s)
Description
Takes a pair of vectors of estimates and their p-values for some hypothesis test, and uses qvalue methods from storey and Tibshirani to estimate the number of True Negatives (pi0) and creat a p-value histogram. It doesn't consider cases where the estimate is undefined.
Usage
1 | check_pvalues(estimates, pvals, plot = TRUE)
|
Arguments
estimates |
numeric verctor of estimates |
pvals |
numeric vector of p-values |
plot |
plot or not |
Value
a list with elements pi0 with the point estimate of pi0 and p1 which is a ggplot2 plot or NULL in case parameter plot was FALSE
Author(s)
Sur Herrera Paredes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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