calculate_prevalence: Calculate taxon prevalence
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Author(s)
View source: R/calculate_prevalence.r
Description
Calculates the prevalence of each
taxon overall or by some grouping factor.
Usage
1
calculate_prevalence(Dat, thres = 1, group = NULL)
Arguments
Dat
a dataset object
thres
Minimum number of reads for a taxon
in a sample to be counted as present.
group
A grouping variable
Author(s)
Sur Herrera Paredes
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Author(s)
View source: R/calculate_prevalence.r
Description
Calculates the prevalence of each taxon overall or by some grouping factor.
Usage
1 | calculate_prevalence(Dat, thres = 1, group = NULL)
|
Arguments
Dat |
a dataset object |
thres |
Minimum number of reads for a taxon in a sample to be counted as present. |
group |
A grouping variable |
Author(s)
Sur Herrera Paredes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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