check_pvals_in_file: Check p-values in MKtest.py outfile
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Value
Author(s)
Description
Opens a file from MKtest.py and uses the qvalue methods
of Storey and Tibshirani to estimate the proportion
of True Negatives (Pi0) in the data
Usage
1
check_pvals_in_file(file, which, plot = TRUE)
Arguments
file
file name
which
either 'all' or the name of the test to
be analyzed
plot
whether to return a histogram of the p-values
Value
A named list where each element corresponds to
a test and each element is alist with pi0 and p1 entries.
See check_pvalues for more info
Author(s)
Sur Herrera Paredes
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Value Author(s)
Description
Opens a file from MKtest.py and uses the qvalue methods of Storey and Tibshirani to estimate the proportion of True Negatives (Pi0) in the data
Usage
1 | check_pvals_in_file(file, which, plot = TRUE)
|
Arguments
file |
file name |
which |
either 'all' or the name of the test to be analyzed |
plot |
whether to return a histogram of the p-values |
Value
A named list where each element corresponds to a test and each element is alist with pi0 and p1 entries. See check_pvalues for more info
Author(s)
Sur Herrera Paredes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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