format_input: Formats input form HMMCP 16S files
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Value
Author(s)
Description
Only to be used to process 16S files from MOTHUR \
pipeline of HMP (HMMCP). Count files must be pre-edited
to remove trailing tab
Usage
1
2
3
4
5
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7
format_input(
name,
counts_file,
taxonomy_file,
Map = Map,
collapse_level = NULL
)
Arguments
name
name(not used anymore?)
counts_file
A file with counts
taxonomy_file
A file with taxonomy
Map
A mapping data.frame
collapse_level
Level to collapse taxonomy
Value
A Dataset object
Author(s)
Sur Herrera Paredes
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Value Author(s)
Description
Only to be used to process 16S files from MOTHUR \ pipeline of HMP (HMMCP). Count files must be pre-edited to remove trailing tab
Usage
1 2 3 4 5 6 7 | format_input(
name,
counts_file,
taxonomy_file,
Map = Map,
collapse_level = NULL
)
|
Arguments
name |
name(not used anymore?) |
counts_file |
A file with counts |
taxonomy_file |
A file with taxonomy |
Map |
A mapping data.frame |
collapse_level |
Level to collapse taxonomy |
Value
A Dataset object
Author(s)
Sur Herrera Paredes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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