API for surh/HMVAR
Human Microbiome Variant Analysis in R

Global functions
%>%	Man page
annotate_gos	Man page Source code
annots_to_geneGO	Man page Source code
assign_allele	Man page Source code
benchmark_imputation	Man page Source code
bimbam_impute	Man page
calculate_dos	Man page Source code
calculate_fst	Man page Source code
calculate_mktable	Man page Source code
calculate_p_error	Man page Source code
calculate_prevalence	Man page Source code
check_map	Man page Source code
check_midas_data	Man page Source code
check_pvals_in_file	Man page Source code
check_pvalues	Man page Source code
determine_sample_dist	Man page Source code
determine_snp_dist	Man page Source code
determine_snp_effect	Man page Source code
determine_substitution_type	Man page Source code
dos	Man page Source code
expand_annot	Man page Source code
find_singletons	Man page Source code
format_input	Man page Source code
format_input_hmmcp	Man page
format_input_hmqcp	Man page Source code
gemma_kinship	Man page
gemma_lmm	Man page
gene_midas_data	Man page Source code
gene_sel_fun	Man page Source code
gene_snv_aln	Man page Source code
genome_wide_ni	Man page Source code
get_mk_results_files	Man page Source code
get_sequence_fragment	Man page Source code
get_site_dist	Man page Source code
group_size	Man page Source code
gsea	Man page Source code
match_freq_and_depth	Man page Source code
mice_impute	Man page
midas_dos	Man page Source code
midas_mktest	Man page Source code
midas_to_bimbam	Man page Source code
mktest	Man page Source code
mkvalues	Man page Source code
phylotype2rdp	Man page Source code
phylotype2rdp2	Man page Source code
plotgg_manhattan	Man page Source code
plotgg_stacked_columns	Man page Source code
pval_qqplot	Man page Source code
qp_genotypes	Man page Source code
read_eggnog	Man page Source code
read_midas_abun	Man page Source code
read_midas_data	Man page Source code
read_midas_info	Man page Source code
reexports	Man page
run_command	Man page Source code
select_samples_from_abun	Man page Source code
sign_test	Man page Source code
site_fst	Man page Source code
term_gsea	Man page Source code
terms_enrichment	Man page Source code
test_go	Man page Source code
test_go.character	Man page Source code
test_go.numeric	Man page Source code
test_singleton_enrichment	Man page Source code
tidy_mice	Man page
variable_dist_per_site	Man page
varsites_pipeline	Man page
window_fst	Man page Source code