API for surh/HMVAR
Human Microbiome Variant Analysis in R

Global functions
%>% Man page
annotate_gos Man page Source code
annots_to_geneGO Man page Source code
assign_allele Man page Source code
benchmark_imputation Man page Source code
bimbam_impute Man page
calculate_dos Man page Source code
calculate_fst Man page Source code
calculate_mktable Man page Source code
calculate_p_error Man page Source code
calculate_prevalence Man page Source code
check_map Man page Source code
check_midas_data Man page Source code
check_pvals_in_file Man page Source code
check_pvalues Man page Source code
determine_sample_dist Man page Source code
determine_snp_dist Man page Source code
determine_snp_effect Man page Source code
determine_substitution_type Man page Source code
dos Man page Source code
expand_annot Man page Source code
find_singletons Man page Source code
format_input Man page Source code
format_input_hmmcp Man page
format_input_hmqcp Man page Source code
gemma_kinship Man page
gemma_lmm Man page
gene_midas_data Man page Source code
gene_sel_fun Man page Source code
gene_snv_aln Man page Source code
genome_wide_ni Man page Source code
get_mk_results_files Man page Source code
get_sequence_fragment Man page Source code
get_site_dist Man page Source code
group_size Man page Source code
gsea Man page Source code
match_freq_and_depth Man page Source code
mice_impute Man page
midas_dos Man page Source code
midas_mktest Man page Source code
midas_to_bimbam Man page Source code
mktest Man page Source code
mkvalues Man page Source code
phylotype2rdp Man page Source code
phylotype2rdp2 Man page Source code
plotgg_manhattan Man page Source code
plotgg_stacked_columns Man page Source code
pval_qqplot Man page Source code
qp_genotypes Man page Source code
read_eggnog Man page Source code
read_midas_abun Man page Source code
read_midas_data Man page Source code
read_midas_info Man page Source code
reexports Man page
run_command Man page Source code
select_samples_from_abun Man page Source code
sign_test Man page Source code
site_fst Man page Source code
term_gsea Man page Source code
terms_enrichment Man page Source code
test_go Man page Source code
test_go.character Man page Source code
test_go.numeric Man page Source code
test_singleton_enrichment Man page Source code
tidy_mice Man page
variable_dist_per_site Man page
varsites_pipeline Man page
window_fst Man page Source code
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.