test_singleton_enrichment: Test for singleton enrichments
In surh/HMVAR: Human Microbiome Variant Analysis in R
Description
Usage
Arguments
Value
Description
Takes table of singletons and overall SNVs and tests for an enrichment
of overall singletons of enrichments per gene, as well as an erichment
of non-synonymous over synonymous mutations among singletons versus
among non-singletons
Usage
1
test_singleton_enrichment(Dat, info)
Arguments
Dat
A table with one singelton site per row. Must have columns
site_id, gene_id and snp_effect.
info
A table with information about all SNV sites (singleton and
non-singleton) in the genes
being tested. Must have columns site_id, gene_id, and snp_effect.
Value
A tibble
surh/HMVAR documentation built on Aug. 18, 2021, 1:21 a.m.
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Description Usage Arguments Value
Description
Takes table of singletons and overall SNVs and tests for an enrichment of overall singletons of enrichments per gene, as well as an erichment of non-synonymous over synonymous mutations among singletons versus among non-singletons
Usage
1 | test_singleton_enrichment(Dat, info)
|
Arguments
Dat |
A table with one singelton site per row. Must have columns site_id, gene_id and snp_effect. |
info |
A table with information about all SNV sites (singleton and non-singleton) in the genes being tested. Must have columns site_id, gene_id, and snp_effect. |
Value
A tibble
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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