Description Usage Arguments Value
Finds variants that have singleton alleles and returns the positions and the samples where they ocurr.
1 | find_singletons(alleles, midas_dir, info, meta)
|
alleles |
site x sample alleles table. Must have column site_id plus one column per sample |
midas_dir |
Instead of alleles table. A path with output files in the format of midas merge can be provided. Must have freqs, depth and info files. |
info |
Optional site info table to append metadata to singleton sites. Must have a site_id column. |
meta |
Optional sample metadata to append to samplew with singleton sites. Must have column sample. |
a tibble with one row per singleton
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