determine_substitution_type: Determine DNA substitution type
In surh/HMVAR: Human Microbiome Variant Analysis in R

Description Usage Arguments Value Examples

Determines if a substitution was made of transitions or transversions.

1	determine_substitution_type(info, clean = TRUE)

`info`	A data.frame or tibble. It should have columns 'major_allele' and 'minor_allele'. These columns must have single DNA characters in upper case.
`clean`	Indicate if sites should be removed when substitution type could not be correctly inferred.

The same data.frame or tibble as info, with an extra column called 'substitution'.

library(HMVAR)

i <- dplyr::tibble(major_allele = c('A', 'C', 'G', 'T', 'a', NA),
                   minor_allele = c('T', 'T', 'A', 'A', 'T', 'G'))
determine_substitution_type(i, clean = FALSE)