mcell_mc2d_force_knn_on_cells: Compute cells 2d coordinates based on the mc graph when the...

In tanaylab/metacell: Meta cell analysis for single cell RNA-seq data

Compute cells 2d coordinates based on the mc graph when the mc coordinates are supplied externally

Description

Compute cells 2d coordinates based on the mc graph when the mc coordinates are supplied externally

Usage

mcell_mc2d_force_knn_on_cells(
  mc2d_id,
  mc_id,
  graph_id,
  mc_xy,
  ignore_mismatch = F
)

Arguments

mc2d_id	2d object to add
mc_id	meta cell id to work with
graph_id	graph_id of the similarity graph on cells from the metacell
mc_xy	pre-defined metacells coordinates (so only coordinates of cells will be computed). Data frame with 2 columns named mc_x and mc_y (x and y coodinates, respectively).
ignore_mismatch

tanaylab/metacell documentation built on Oct. 19, 2023, 1:01 p.m.