Files in zh542370159/SCP

Single Cell Pipeline

LICENSE.md R/RcppExports.R R/SCP-analysis.R R/SCP-app.R R/SCP-cell_annotation.R R/SCP-cellqc.R R/SCP-feature_annotation.R R/SCP-plot.R R/SCP-projection.R R/SCP-workflow.R R/Seurat-function.R R/data.R R/ggsankey.R R/reexports.R R/utils.R R/zzz.R README.Rmd README.md man/AnnotateFeatures.Rd man/BBKNN_integrate.Rd man/CC_GenePrefetch.Rd man/CSS_integrate.Rd man/CellCorHeatmap.Rd man/CellDensityPlot.Rd man/CellDimPlot.Rd man/CellDimPlot3D.Rd man/CellScoring.Rd man/CellStatPlot.Rd man/ComBat_integrate.Rd man/Conos_integrate.Rd man/CreateDataFile.Rd man/CreateMetaFile.Rd man/DefaultReduction.Rd man/DynamicHeatmap.Rd man/DynamicPlot.Rd man/EnrichmentPlot.Rd man/Env_requirements.Rd man/FeatureCorPlot.Rd man/FeatureDimPlot.Rd man/FeatureDimPlot3D.Rd man/FeatureHeatmap.Rd man/FeatureStatPlot.Rd man/FetchH5.Rd man/GSEAPlot.Rd man/GeneConvert.Rd man/GraphPlot.Rd man/GroupHeatmap.Rd man/Harmony_integrate.Rd man/Integration_SCP.Rd man/LIGER_integrate.Rd man/LineagePlot.Rd man/ListDB.Rd man/MNN_integrate.Rd man/PAGAPlot.Rd man/PrepareDB.Rd man/PrepareEnv.Rd man/PrepareSCExplorer.Rd man/ProjectionPlot.Rd man/RecoverCounts.Rd man/RenameClusters.Rd man/RenameFeatures.Rd man/RunCSSMap.Rd man/RunCellQC.Rd man/RunDEtest.Rd man/RunDM.Rd man/RunDimReduction.Rd man/RunDoubletCalling.Rd man/RunDynamicEnrichment.Rd man/RunDynamicFeatures.Rd man/RunEnrichment.Rd man/RunFR.Rd man/RunGLMPCA.Rd man/RunGSEA.Rd man/RunHarmony2.Rd man/RunKNNMap.Rd man/RunKNNPredict.Rd man/RunLargeVis.Rd man/RunMDS.Rd man/RunMonocle2.Rd man/RunMonocle3.Rd man/RunNMF.Rd man/RunPAGA.Rd man/RunPCAMap.Rd man/RunPHATE.Rd man/RunPaCMAP.Rd man/RunPalantir.Rd man/RunSCExplorer.Rd man/RunSCVELO.Rd man/RunScmap.Rd man/RunSeuratMap.Rd man/RunSingleR.Rd man/RunSlingshot.Rd man/RunSymphonyMap.Rd man/RunTriMap.Rd man/RunUMAP2.Rd man/RunWOT.Rd man/Scanorama_integrate.Rd man/Seurat_integrate.Rd man/SrtAppend.Rd man/SrtReorder.Rd man/Standard_SCP.Rd man/StatPlot.Rd man/Uncorrected_integrate.Rd man/VelocityPlot.Rd man/VolcanoPlot.Rd man/adata_to_srt.Rd man/adjcolors.Rd man/as_matrix.Rd man/blendcolors.Rd man/capitalize.Rd man/check_DataType.Rd man/check_Python.Rd man/check_R.Rd man/check_srtList.Rd man/check_srtMerge.Rd man/compute_velocity_on_grid.Rd man/conda_install.Rd man/conda_python.Rd man/db_DoubletDetection.Rd man/db_Scrublet.Rd man/db_scDblFinder.Rd man/db_scds.Rd man/download.Rd man/drop_data.Rd man/env_exist.Rd man/exist_Python_pkgs.Rd man/fastMNN_integrate.Rd man/find_conda.Rd man/geom_alluvial.Rd man/geom_alluvial_label.Rd man/geom_sankey.Rd man/geom_sankey_bump.Rd man/geom_sankey_label.Rd man/get_vars.Rd man/ifnb_sub.Rd man/installed_Python_pkgs.Rd man/invoke.Rd man/isOutlier.Rd man/iterchunks.Rd man/lifemap_cell.Rd man/make_long.Rd man/palette_list.Rd man/palette_scp.Rd man/panc8_sub.Rd man/pancreas_sub.Rd man/panel_fix.Rd man/reexports.Rd man/ref_scHCL.Rd man/scVI_integrate.Rd man/segementsDf.Rd man/show_palettes.Rd man/slim_data.Rd man/srt_to_adata.Rd man/theme_blank.Rd man/theme_sankey.Rd man/theme_scp.Rd man/tochunks.Rd man/try_get.Rd man/unnest.Rd man/words_excluded.Rd