topDSExons: Extract top differentially spliced exons

Description Usage Arguments Value Author(s) See Also Examples

View source: R/DSscore.R

Description

This function is to extract top n differentially spliced exons, ranked by p-values or NB-stats.

Usage

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topDSExons(RCS, n = 20, sortBy = c("pvalue", "NBstat"))

Arguments

RCS

a ReadCountSet object after running DSpermutePval.

n

the number of top genes.

sortBy

indicating whether p-value or NBstat to be used for ranking genes.

Value

A table for top n exons. Columns include: geneID, exonID, testable, NBstat, pvalue, padjust, and meanCounts.

Author(s)

Xi Wang, xi.wang@newcastle.edu.au

See Also

topDSGenes, DSpermutePval

Examples

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SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.