API for ViSEAGO
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
| Global functions | |
|---|---|
| Bioconductor2GO | Man page Source code |
| Custom2GO | Man page Source code |
| Ensembl2GO | Man page Source code |
| EntrezGene2GO | Man page Source code |
| EntrezGene_orthologs | Man page Source code |
| GO_SS-class | Man page |
| GO_clusters-class | Man page |
| GOclusters_heatmap | Man page |
| GOclusters_heatmap,GO_clusters,list-method | Man page |
| GOcount | Man page |
| GOcount,ANY-method | Man page |
| GOterms_heatmap | Man page |
| GOterms_heatmap,GO_SS-method | Man page |
| MDSplot | Man page |
| MDSplot,ANY-method | Man page |
| Uniprot2GO | Man page Source code |
| Upset | Man page |
| Upset,ANY-method | Man page |
| ViSEAGO | Man page |
| annotate | Man page |
| annotate,character,genomic_ressource-method | Man page |
| available_organisms | Man page |
| available_organisms,genomic_ressource-method | Man page |
| build_GO_SS | Man page |
| build_GO_SS,gene2GO,enrich_GO_terms-method | Man page |
| clusters_cor | Man page |
| clusters_cor,list,character-method | Man page |
| compare_clusters | Man page |
| compare_clusters,list-method | Man page |
| compute_SS_distances | Man page |
| compute_SS_distances,ANY,character-method | Man page |
| create_topGOdata | Man page |
| create_topGOdata,ANY,ANY,ANY,gene2GO,character,numeric-method | Man page |
| enrich_GO_terms-class | Man page |
| fgsea-class | Man page |
| gene2GO-class | Man page |
| genomic_ressource-class | Man page |
| merge_enrich_terms | Man page |
| merge_enrich_terms,list-method | Man page |
| myGOs | Man page |
| overLapper | Man page Source code |
| pkgdiagram | Man page Source code |
| runfgsea | Man page |
| runfgsea,ANY,gene2GO,character-method | Man page |
| show_heatmap | Man page |
| show_heatmap,GO_clusters,character-method | Man page |
| show_table | Man page |
| show_table,ANY-method | Man page |
| taxonomy | Man page Source code |
