available_organisms-methods: Display available organisms from a specified database.

In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

Description

Display an interactive table with available organisms from a genomic ressource database (Bioconductor, EntrezGene, Ensembl, Uniprot).

Usage

available_organisms(object)

## S4 method for signature 'genomic_ressource'
available_organisms(object)

Arguments

object

a genomic_ressource-class object created by Bioconductor2GO, EntrezGene2GO, Ensembl2GO,or Uniprot2GO methods.

Details

an interactive datatable.

Value

javascript datatable

References

Yihui Xie (2016). DT: A Wrapper of the JavaScript Library 'DataTables'. R package version 0.2. https://CRAN.R-project.org/package=DT

See Also

Other genomic_ressource: Bioconductor2GO(), Custom2GO(), Ensembl2GO(), EntrezGene2GO(), Uniprot2GO(), annotate(), genomic_ressource-class, taxonomy()

Other visualization: GOclusters_heatmap(), GOcount(), GOterms_heatmap(), Upset(), overLapper(), show_heatmap(), show_table()

Examples

# display Bioconductor table
Bioconductor<-ViSEAGO::Bioconductor2GO()
ViSEAGO::available_organisms(Bioconductor)
## Not run: 

# display EntrezGene table
EntrezGene<-ViSEAGO::EntrezGene2GO()
ViSEAGO::available_organisms(EntrezGene)

# display Ensembl table
Ensembl<-ViSEAGO::Ensembl2GO()
ViSEAGO::available_organisms(Ensembl)

# display Uniprot table
Uniprot<-ViSEAGO::Uniprot2GO()
ViSEAGO::available_organisms(Uniprot)

## End(Not run)

ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.