GO_clusters-class: GO_clusters class object
In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
Description
This class is invoked by GOterms_heatmap and GOclusters_heatmap methods to store all results produced.
Slots
ontontology used "MF", "BP", or "CC".
enrich_GOsenrich_GO_terms-class object.
ICInformation Content (IC).
terms_distdistance between GO terms based on semantic similiarity.
clusters_distdistance between GO groups based on semantic similiarity.
hcl_paramsHierarchical clustering parameters used.
dendrogramsGO terms and samples dendrograms.
samples.gpsamples groups.
heatmapGO terms and GO groups heatmaps.
See Also
Other GO_clusters:
GOclusters_heatmap(),
clusters_cor(),
compare_clusters(),
show_heatmap(),
show_table()
ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.
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Description
This class is invoked by GOterms_heatmap and GOclusters_heatmap methods to store all results produced.
Slots
ontontology used "MF", "BP", or "CC".
enrich_GOsenrich_GO_terms-classobject.ICInformation Content (IC).
terms_distdistance between GO terms based on semantic similiarity.
clusters_distdistance between GO groups based on semantic similiarity.
hcl_paramsHierarchical clustering parameters used.
dendrogramsGO terms and samples
dendrograms.samples.gpsamples groups.
heatmapGO terms and GO groups heatmaps.
See Also
Other GO_clusters:
GOclusters_heatmap(),
clusters_cor(),
compare_clusters(),
show_heatmap(),
show_table()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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