GOcount-methods: Barplot for the count of GO terms.

In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

Description

This method displays in barplot the count of GO terms splitted in two categories (significant or not) for each result of GO enrichment tests.

Usage

GOcount(object, file = NULL)

## S4 method for signature 'ANY'
GOcount(object, file = NULL)

Arguments

object	an enrich_GO_terms-class object from merge_enrich_terms method.
file	the name of the output file (default to NULL for interactive screen display).

Details

This method displays an interactive barplot, using plotly package, from a merge_enrich_terms output object.
A static image (in png) could be printed by setting file argument.

Value

a barplot.

References

Carson Sievert, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec and Pedro Despouy (2017). plotly: Create InteractiveWeb Graphics via 'plotly.js'. R package version 4.6.0. https://CRAN.R-project.org/package=plotly.

See Also

Other GO_terms: GOterms_heatmap(), annotate(), create_topGOdata(), gene2GO-class, merge_enrich_terms(), runfgsea()

Other visualization: GOclusters_heatmap(), GOterms_heatmap(), Upset(), available_organisms(), overLapper(), show_heatmap(), show_table()

Examples

# load object
utils::data(
 myGOs,
 package="ViSEAGO"
)

# barplot for the count of GO terms
ViSEAGO::GOcount( myGOs)

ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.