Bioconductor2GO: Check available organisms databases at Bioconductor.

In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

Description

Retrieve the Bioconductor OrgDb available organisms databases packages.

Usage

Bioconductor2GO()

Details

This function gives genome wide annotation for available organisms databases packages from Bioconductor OrgDb. It uses loadAnnDbPkgIndex from AnnotationForge package.

Value

a genomic_ressource-class object required by annotate method.

References

Carlson M and Pages H (2017). AnnotationForge: Code for Building Annotation Database Packages. R package version 1.18.0.

See Also

Other genomic_ressource: Custom2GO(), Ensembl2GO(), EntrezGene2GO(), Uniprot2GO(), annotate(), available_organisms(), genomic_ressource-class, taxonomy()

Examples

# Check Bioconductor OrgDb available organisms
Bioconductor<-ViSEAGO::Bioconductor2GO()

Example output

Warning message:
replacing previous import ‘data.table::set’ by ‘dendextend::set’ when loading ‘ViSEAGO’ 

ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.