Files in ViSEAGO
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/mouse_bionconductor.Rmd
inst/doc/mouse_bionconductor.html
inst/doc/SS_choice.R inst/doc/mouse_bionconductor.R
inst/doc/SS_choice.html
inst/doc/ViSEAGO.html
inst/doc/SS_choice.Rmd inst/doc/ViSEAGO.R inst/doc/ViSEAGO.Rmd
inst/extdata/workflow.png
inst/extdata/bibliography.bib
inst/extdata/figure2_BMCBioData.png
inst/extdata/bmc-genomics.csl
inst/extdata/inra.png
inst/extdata/univ.png
inst/extdata/boa.png
inst/extdata/customfile.txt
inst/extdata/data/edgeR_mouse_mammary_gland.Rmd
inst/extdata/data/input/background_L.txt
inst/extdata/data/input/virginvspregnantDE.txt
inst/extdata/data/input/virginvslactateDE.txt
inst/extdata/data/input/pregnantvslactateDE.txt
inst/extdata/data/output/bioconductor_mds3.png
inst/extdata/data/output/ResnikvsWang_trees_comparison.png
inst/extdata/data/output/bioconductor_GOtermsheatmap.png
inst/extdata/data/output/upset.png
inst/extdata/data/output/bioconductor_BMA.png
inst/extdata/data/output/clusters_comp.png
inst/extdata/data/output/bioconductor_table1.png
inst/extdata/data/output/bioconductor_table2.png
inst/extdata/data/output/clust_cor.png
inst/extdata/data/output/bioconductor_mds2.png
inst/extdata/data/output/dend_cor.png
inst/extdata/data/output/gocount.png
inst/extdata/data/output/bioconductor_mds1.png
vignettes/mouse_bionconductor.Rmd vignettes/SS_choice.Rmd vignettes/ViSEAGO.Rmd R/taxonomy.R R/create_topGOdata.R R/datasets.R R/GOterms_heatmap.R R/show_table.R R/GO_SS.R R/overlapper.R R/annotate.R R/GOcount.R R/pkgdiagram.R R/GOclusters_heatmap.R R/EntrezGene2GO.R R/build_GO_SS.R R/merge_enrich_terms.R R/MDSplot.R R/custom2GO.R R/EntrezGene_orthologs.R R/Bioconductor2GO.R R/gene2GO.R R/genomic_ressource.R R/Uniprot2GO.R R/show_heatmap.R R/Ensembl2GO.R R/enrich_GO_terms.R R/available_organisms.R R/Upset.R R/GO_clusters.R R/compute_SS_distances.R R/clusters_cor.R R/compare_clusters.R R/ViSEAGO.R man/pkgdiagram.Rd man/Ensembl2GO.Rd man/genomic_ressource-class.Rd man/Uniprot2GO.Rd man/MDSplot-methods.Rd man/EntrezGene_orthologs.Rd man/GOterms_heatmap-methods.Rd man/Bioconductor2GO.Rd man/EntrezGene2GO.Rd man/create_topGOdata-methods.Rd man/myGOs.Rd man/show_table-methods.Rd man/show_heatmap-methods.Rd man/taxonomy.Rd man/compute_SS_distances-methods.Rd man/overLapper.Rd man/build_GO_SS-methods.Rd man/available_organisms-methods.Rd man/merge_enrich_terms-methods.Rd man/Custom2GO.Rd man/enrich_GO_terms-class.Rd man/clusters_cor-methods.Rd man/annotate-methods.Rd man/GO_clusters-class.Rd man/ViSEAGO.Rd man/GOcount-methods.Rd man/gene2GO-class.Rd man/Upset-methods.Rd man/GOclusters_heatmap-methods.Rd man/compare_clusters-methods.Rd man/GO_SS-class.Rd
build/vignette.rds
data/myGOs.RData
ViSEAGO documentation built on Oct. 31, 2019, 10:13 a.m.