pkgdiagram: Display the ViSEAGO package diagram.

In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

Description

This function build the ViSEAGO package diagram available displayed in the vignette.

Usage

pkgdiagram(x = c("white", "white", "white", "white", "white"))

Arguments

x	rectangles colors for the five subgraphs with all white by defaults

Details

This function use DiagrammeR package grViz to display the ViSEAGO methods diagram with colored or not subgraphs rectangles.

Value

an html diagram

References

Knut Sveidqvist, Mike Bostock, Chris Pettitt, Mike Daines, Andrei Kashcha and Richard Iannone (2017). DiagrammeR: Create Graph Diagrams and Flowcharts Using R. R package version 0.9.0. https://CRAN.R-project.org/package=DiagrammeR.

Examples

# print diagram without focus
ViSEAGO::pkgdiagram(x=c("white","white","white","white","white"))

# print diagram with focus one the gene list
ViSEAGO::pkgdiagram(x=c("black","white","white","white","white"))

# print diagram with a focus on the annotation step
ViSEAGO::pkgdiagram(x=c("white","black","white","white","white"))

# print diagram with a focus on the enrichment step
ViSEAGO::pkgdiagram(x=c("white","white","black","white","white"))

# print diagram with a focus on the Semantic Similarity step
ViSEAGO::pkgdiagram(x=c("white","white","white","black","white"))

# print diagram with focus on the visualization step
ViSEAGO::pkgdiagram(x=c("white","white","white","white","black"))

ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.