enrich_GO_terms-class: enrich_GO_terms class object definition.
In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
Description
This class is invoked by merge_enrich_terms method in order to store the merged data.table and associated metadata.
Slots
same_genes_backgroundlogical.
object(s) to combinate (see examples in merge_enrich_terms).
ontontology used "MF", "BP", or "CC".
methodenrichment test used "topGO", or "fgsea".
summarya list with topGO or fgsea object(s) summary informations.
dataa merged data.table of enriched GO terms (p<0.01) in at least once with GO descriptions and statistical values.
See Also
Other enrich_GO_terms:
Upset(),
overLapper(),
show_heatmap(),
show_table()
ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.
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Description
This class is invoked by merge_enrich_terms method in order to store the merged data.table and associated metadata.
Slots
same_genes_backgroundlogical. object(s) to combinate (see examples in
merge_enrich_terms).ontontology used "MF", "BP", or "CC".
methodenrichment test used "topGO", or "fgsea".
summarya
listwith topGO or fgsea object(s) summary informations.dataa merged
data.tableof enriched GO terms (p<0.01) in at least once with GO descriptions and statistical values.
See Also
Other enrich_GO_terms:
Upset(),
overLapper(),
show_heatmap(),
show_table()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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