Upset-methods: Enriched GO terms intersections plot.

In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

Description

This method allows to visualize GO terms intersections between results of enrichment tests.

Usage

Upset(object, file = "./upset.xls")

## S4 method for signature 'ANY'
Upset(object, file = "./upset.xls")

Arguments

object	an enrich_GO_terms-class or GO_clusters-class objects.
file	output file name (default to "./upset.xls")

Details

This function displays and print the intersections of enriched GO terms (p<0.01) between all results provided by enrich_GO_terms-class or GO_clusters-class objects. The intersections are shown in an upset plot and printed in a table.

Value

print table and upset.

See Also

Other enrich_GO_terms: enrich_GO_terms-class, overLapper(), show_heatmap(), show_table()

Other visualization: GOclusters_heatmap(), GOcount(), GOterms_heatmap(), available_organisms(), overLapper(), show_heatmap(), show_table()

Examples

# load example object
data(
    myGOs,
    package="ViSEAGO"
)

# print upset
ViSEAGO::Upset(myGOs)

ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.