genomic_ressource-class: genomic_ressource class object definition.

In ViSEAGO: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

Description

This class stores the annotations and associated metadata obtained by Bioconductor2GO, EntrezGene2GO, Ensembl2GO, or Uniprot2GO .

Slots

db

name of database used (Bioconductor, EntrezGene, Ensembl, or Uniprot).

stamp

date of stamp (for Bioconductor, EntrezGene, and Uniprot), or annotation version for Ensembl database.

data

GO annotations from EntrezGene2GO method.

organisms

informations about species/datasets availables.

mart

Ensembl mart from Ensembl2GO method.

See Also

Other genomic_ressource: Bioconductor2GO(), Custom2GO(), Ensembl2GO(), EntrezGene2GO(), Uniprot2GO(), annotate(), available_organisms(), taxonomy()

ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.