Files in ViSEAGO
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
README.md
ViSEAGO documentation built on Nov. 8, 2020, 6:51 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/myGOs.RData
R/fgsea.R
R/GO_SS.R
R/merge_enrich_terms.R
R/GOclusters_heatmap.R
R/show_heatmap.R
R/MDSplot.R
R/ViSEAGO.R
R/enrich_GO_terms.R
R/Ensembl2GO.R
R/Bioconductor2GO.R
R/GO_clusters.R
R/overlapper.R
R/compare_clusters.R
R/custom2GO.R
R/compute_SS_distances.R
R/EntrezGene_orthologs.R
R/annotate.R
R/build_GO_SS.R
R/runfgsea.R
R/EntrezGene2GO.R
R/GOterms_heatmap.R
R/pkgdiagram.R
R/datasets.R
R/Uniprot2GO.R
R/GOcount.R
R/Upset.R
R/taxonomy.R
R/show_table.R
R/create_topGOdata.R
R/gene2GO.R
R/genomic_ressource.R
R/available_organisms.R
R/clusters_cor.R
vignettes/mouse_bioconductor.Rmd
vignettes/SS_choice.Rmd
vignettes/ViSEAGO.Rmd
vignettes/fgsea_alternative.Rmd
man/Ensembl2GO.Rd
man/annotate-methods.Rd
man/clusters_cor-methods.Rd
man/GOcount-methods.Rd
man/GOterms_heatmap-methods.Rd
man/MDSplot-methods.Rd
man/compare_clusters-methods.Rd
man/Custom2GO.Rd
man/EntrezGene_orthologs.Rd
man/enrich_GO_terms-class.Rd
man/GO_clusters-class.Rd
man/ViSEAGO.Rd
man/create_topGOdata-methods.Rd
man/EntrezGene2GO.Rd
man/myGOs.Rd
man/compute_SS_distances-methods.Rd
man/show_heatmap-methods.Rd
man/taxonomy.Rd
man/genomic_ressource-class.Rd
man/Bioconductor2GO.Rd
man/build_GO_SS-methods.Rd
man/Uniprot2GO.Rd
man/GO_SS-class.Rd
man/GOclusters_heatmap-methods.Rd
man/overLapper.Rd
man/gene2GO-class.Rd
man/pkgdiagram.Rd
man/Upset-methods.Rd
man/available_organisms-methods.Rd
man/show_table-methods.Rd
man/runfgsea-methods.Rd
man/fgsea-class.Rd
man/merge_enrich_terms-methods.Rd
inst/CITATION
inst/doc/fgsea_alternative.R
inst/doc/mouse_bioconductor.Rmd
inst/doc/SS_choice.Rmd
inst/doc/SS_choice.html
inst/doc/ViSEAGO.R
inst/doc/ViSEAGO.Rmd
inst/doc/fgsea_alternative.Rmd
inst/doc/mouse_bioconductor.html
inst/doc/SS_choice.R
inst/doc/fgsea_alternative.html
inst/doc/ViSEAGO.html
inst/doc/mouse_bioconductor.R
inst/extdata/bmc-genomics.csl
inst/extdata/workflow.png
inst/extdata/customfile.txt
inst/extdata/univ.png
inst/extdata/inra.png
inst/extdata/bibliography.bib
inst/extdata/figure2_BMCBioData.png
inst/extdata/boa.png
inst/extdata/data/edgeR_mouse_mammary_gland.Rmd
inst/extdata/data/input/background_L.txt
inst/extdata/data/input/virginvspregnant.complete.txt
inst/extdata/data/input/pregnantvslactateDE.txt
inst/extdata/data/input/virginvslactateDE.txt
inst/extdata/data/input/pregnantvslactate.complete.txt
inst/extdata/data/input/virginvslactate.complete.txt
inst/extdata/data/input/virginvspregnantDE.txt
inst/extdata/data/output/clusters_comp.png
inst/extdata/data/output/gocount.png
inst/extdata/data/output/bioconductor_table2.png
inst/extdata/data/output/bioconductor_GOtermsheatmap.png
inst/extdata/data/output/bioconductor_mds3.png
inst/extdata/data/output/clust_cor.png
inst/extdata/data/output/ResnikvsWang_trees_comparison.png
inst/extdata/data/output/bioconductor_mds2.png
inst/extdata/data/output/dend_cor.png
inst/extdata/data/output/upset.png
inst/extdata/data/output/bioconductor_table1.png
inst/extdata/data/output/bioconductor_BMA.png
inst/extdata/data/output/bioconductor_mds1.png
