Files in dendextend

Extending 'dendrogram' Functionality in R

NEWS.md README.md R/Hmisc.R R/rect.dendrogram.R R/rainbow_fun.R R/dendlist.R R/is.functions.R R/find_dend.R R/color_branches.R R/branches_attr_by.R R/pvclust.R R/stats_imports.R R/get_nodes_xy.R R/ggdend.R R/entanglement.R R/rotate.R R/circlize.R R/highlight_branches.R R/ggdendro.R R/data.R R/nleaves.R R/common_subtrees.R R/bk_method.R R/tanglegram.R R/depth.R R/dendextend-package.R R/cor.dendlist.R R/cor_bakers_gamma.R R/find_k.R R/untangle.R R/noded_with_condition.R R/unbranch.R R/get_subdendrograms.R R/dendextend_options.R R/prune.R R/dist_long.R R/cor_cophenetic.R R/attr_access.R R/dendextend.R R/sample.dendrogram.R R/zzz.R R/cutree.dendrogram.R R/labels_colors.R R/ape.R R/as.dendrogram.randomForest.R R/colored_bars.R R/has_edgePar.R R/all.equal.R R/cut_lower_fun.R R/DendSer.R R/set.dendrogram.R R/seriate_dendrogram.R R/colored_dots.R R/distinct_edges.R R/magrittr.R R/labels.R inst/doc/Cluster_Analysis.Rmd inst/doc/Quick_Introduction.Rmd inst/doc/dendextend.Rmd inst/doc/Quick_Introduction.R inst/doc/Cluster_Analysis.R inst/doc/dendextend.R inst/doc/FAQ.R inst/doc/FAQ.Rmd demo/dendextend.R tests/testthat.R tests/testthat/test-highlight_branches.R tests/testthat/test-general.R tests/testthat/test-ggdend.R tests/testthat/test-cor_cophenetic.R tests/testthat/test-cutree.dendrogram.R tests/testthat/test-branches_attr_by.R tests/testthat/test-cor_bakers_gamma.R tests/testthat/test-pvclust_extract.R tests/testthat/test-rotate.R tests/testthat/test-cut_lower_fun.R tests/testthat/test-entanglement.R tests/testthat/test-get_subdendrograms.R tests/testthat/test-untangle.R tests/testthat/test-labels_colors.R tests/testthat/test-trim.R tests/testthat/test-attr_access.R tests/testthat/test-rect.dendrogram.R tests/testthat/test-get_nodes_xy.R tests/testthat/test-distinct_edges.R tests/testthat/test-set.dendrogram.R tests/testthat/test-bk_method.R tests/testthat/test-unbranch.R tests/testthat/test-nleaves.R tests/testthat/test-find_dendrogram.R tests/testthat/test-common_subtrees.R tests/testthat/test-labels-assign.R tests/testthat/test-dendlist.R vignettes/Cluster_Analysis.Rmd vignettes/Quick_Introduction.Rmd vignettes/dendextend.Rmd vignettes/FAQ.Rmd man/rotate_DendSer.Rd man/dendextend-package.Rd man/order.dendrogram-assign.Rd man/cor_FM_index.Rd man/cutree_1h.dendrogram.Rd man/dist_long.Rd man/DendSer.dendrogram.Rd man/rotate.Rd man/khan.Rd man/get_nodes_xy.Rd man/find_dendrogram.Rd man/untangle_step_rotate_both_side.Rd man/assign_values_to_leaves_edgePar.Rd man/cor.dendlist.Rd man/unclass_dend.Rd man/is_some_class.Rd man/colored_dots.Rd man/set.Rd man/as_hclust_fixed.Rd man/as.phylo.dendrogram.Rd man/identify.dendrogram.Rd man/reexports.Rd man/prune.Rd man/which_leaf.Rd man/highlight_distinct_edges.Rd man/branches_attr_by_labels.Rd man/cutree_1k.dendrogram.Rd man/leaf_Colors.Rd man/fac2num.Rd man/lowest_common_branch.Rd man/fix_members_attr.dendrogram.Rd man/pvclust_show_signif_gradient.Rd man/untangle_random_search.Rd man/count_terminal_nodes.Rd man/get_nodes_attr.Rd man/colored_bars.Rd man/flatten.dendrogram.Rd man/common_subtrees_clusters.Rd man/nleaves.Rd man/get_childrens_heights.Rd man/set_labels.Rd man/untangle_DendSer.Rd man/get_leaves_edgePar.Rd man/remove_branches_edgePar.Rd man/cor_cophenetic.Rd man/assign_values_to_leaves_nodePar.Rd man/cor_common_nodes.Rd man/distinct_edges.Rd man/prune_leaf.Rd man/pvrect2.Rd man/entanglement.Rd man/flip_leaves.Rd man/match_order_dendrogram_by_old_order.Rd man/sort_dist_mat.Rd man/na_locf.Rd man/cutree-methods.Rd man/Bk_permutations.Rd man/all_couple_rotations_at_k.Rd man/noded_with_condition.Rd man/color_labels.Rd man/hang.dendrogram.Rd man/nnodes.Rd man/match_order_by_labels.Rd man/click_rotate.Rd man/color_branches.Rd man/FM_index_permutation.Rd man/sample.dendrogram.Rd man/get_leaves_attr.Rd man/pvclust_show_signif.Rd man/dist.dendlist.Rd man/raise.dendrogram.Rd man/collapse_branch.Rd man/color_unique_labels.Rd man/untangle_step_rotate_1side.Rd man/find_k.Rd man/duplicate_leaf.Rd man/intersect_trees.Rd man/get_root_branches_attr.Rd man/Bk_plot.Rd man/reindex_dend.Rd man/theme_dendro.Rd man/find_dend.Rd man/branches_attr_by_clusters.Rd man/circlize_dendrogram.Rd man/order.hclust.Rd man/get_subdendrograms.Rd man/get_leaves_branches_attr.Rd man/assign_dendextend_options.Rd man/cut_lower_fun.Rd man/dendextend_options.Rd man/labels_colors.Rd man/is_null_list.Rd man/labels_cex.Rd man/dendlist.Rd man/remove_leaves_nodePar.Rd man/branches_attr_by_lists.Rd man/highlight_branches.Rd man/remove_nodes_nodePar.Rd man/get_branches_heights.Rd man/cor_bakers_gamma.Rd man/assign_values_to_branches_edgePar.Rd man/untangle_step_rotate_2side.Rd man/as.dendlist.Rd man/all.equal.dendrogram.Rd man/has_component_in_attribute.Rd man/labels-assign.Rd man/FM_index.Rd man/heights_per_k.dendrogram.Rd man/which_node.Rd man/pvclust_edges.Rd man/partition_leaves.Rd man/all_unique.Rd man/depth.Rd man/tanglegram.Rd man/prune_common_subtrees.dendlist.Rd man/rank_order.dendrogram.Rd man/collapse_labels.Rd man/seriate_dendrogram.Rd man/rllply.Rd man/plot_horiz.dendrogram.Rd man/dend_diff.Rd man/assign_values_to_nodes_nodePar.Rd man/rect.dendrogram.Rd man/rank_values_with_clusters.Rd man/Bk.Rd man/is.natural.number.Rd man/ladderize.Rd man/FM_index_R.Rd man/shuffle.Rd man/untangle.Rd man/get_leaves_branches_col.Rd man/rank_branches.Rd man/unbranch.Rd man/sort_levels_values.Rd man/bakers_gamma_for_2_k_matrix.Rd man/get_leaves_nodePar.Rd man/ggdend.Rd man/sort_2_clusters_vectors.Rd