calculate_splicing_quantitative_trait_loci: Calculate Splicing Quantitative Trait Loci

In gtexr: Query the GTEx Portal API

Calculate Splicing Quantitative Trait Loci

Description

GTEx Portal API documentation.

Usage

calculate_splicing_quantitative_trait_loci(
  tissueSiteDetailId,
  phenotypeId,
  variantId,
  datasetId = "gtex_v8",
  .return_raw = FALSE
)

Arguments

tissueSiteDetailId	String. The ID of the tissue of interest. Can be a GTEx specific ID (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or an Ontology ID.
phenotypeId	String. See GTEx portal FAQs for further details.
variantId	String. A gtex variant ID.
datasetId	String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".
.return_raw	Logical. If TRUE, return the raw API JSON response. Default = FALSE

Value

A tibble. Or a list if .return_raw = TRUE.

See Also

Other Dynamic Association Endpoints: calculate_expression_quantitative_trait_loci(), calculate_ieqtls(), calculate_isqtls()

Examples

# perform request - returns a tibble with a single row
calculate_splicing_quantitative_trait_loci(
  tissueSiteDetailId = "Whole_Blood",
  phenotypeId = "chr1:15947:16607:clu_40980:ENSG00000227232.5",
  variantId = "chr1_14677_G_A_b38"
)

gtexr documentation built on Aug. 21, 2025, 5:36 p.m.