View source: R/get_fine_mapping.R
get_fine_mapping | R Documentation |
Retrieve Fine Mapping Data
Finds and returns Fine Mapping
data for the provided list of genes
By default, this endpoint fetches data from the latest GTEx
version
The retrieved data is split into pages with items_per_page
entries per page
get_fine_mapping(
gencodeIds,
datasetId = "gtex_v8",
variantId = NULL,
tissueSiteDetailIds = NULL,
page = 0,
itemsPerPage = 250
)
gencodeIds |
A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5"). |
datasetId |
String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot". |
variantId |
String. A gtex variant ID. |
tissueSiteDetailIds |
Character vector of IDs for tissues of interest.
Can be GTEx specific IDs (e.g. "Whole_Blood"; use
|
page |
Integer (default = 0). |
itemsPerPage |
Integer (default = 250). |
A tibble.
Other Static Association Endpoints:
get_eqtl_genes()
,
get_independent_eqtl()
,
get_multi_tissue_eqtls()
,
get_significant_single_tissue_eqtls()
,
get_significant_single_tissue_eqtls_by_location()
,
get_significant_single_tissue_ieqtls()
,
get_significant_single_tissue_isqtls()
,
get_significant_single_tissue_sqtls()
,
get_sqtl_genes()
## Not run:
# search by gene
get_fine_mapping(gencodeIds = c("ENSG00000132693.12",
"ENSG00000203782.5"))
# optionally filter for a single variant and/or one or more tissues
get_fine_mapping(gencodeIds = c("ENSG00000132693.12",
"ENSG00000203782.5"),
variantId = "chr1_153228363_A_G_b38",
tissueSiteDetailIds = c("Whole_Blood",
"Thyroid"))
## End(Not run)
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