get_exons: Get Exons

In gtexr: Query the GTEx Portal API

Get Exons

Description

This service returns exons from all known transcripts of the given gene.

• A versioned GENCODE ID is required to ensure that all exons are from a single gene.

• A dataset ID or both GENCODE version and genome build must be provided.

• Although annotated exons are not dataset dependent, specifying a dataset here is equivalent to specifying the GENCODE version and genome build used by that dataset.

GTEx Portal API documentation

Usage

get_exons(
  gencodeId,
  gencodeVersion = NULL,
  genomeBuild = NULL,
  datasetId = "gtex_v8",
  page = 0,
  itemsPerPage = 250
)

Arguments

gencodeId	String. A Versioned GENCODE ID of a gene, e.g. "ENSG00000065613.9".
gencodeVersion	String (default = "v26"). GENCODE annotation release. Either "v26" or "v19".
genomeBuild	String. Options: "GRCh38/hg38", "GRCh37/hg19". Default = "GRCh38/hg38".
datasetId	String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".
page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble.

See Also

Other Reference Genome Endpoints: get_gene_search(), get_genes(), get_genomic_features(), get_gwas_catalog_by_location(), get_neighbor_gene(), get_transcripts()

Examples

## Not run: 
get_exons(gencodeId = "ENSG00000203782.5")

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.