get_neighbor_gene: Get Neighbor Gene

In gtexr: Query the GTEx Portal API

Get Neighbor Gene

Description

Find all neighboring genes on a certain chromosome around a position with a certain window size.

GTEx API Portal documentation

Usage

get_neighbor_gene(pos, chromosome, bp_window, page = 0, itemsPerPage = 250)

Arguments

pos	Integer, vector.
chromosome	String. One of "chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrM", "chrX", "chrY".
bp_window	Integer.
page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble.

See Also

Other Reference Genome Endpoints: get_exons(), get_gene_search(), get_genes(), get_genomic_features(), get_gwas_catalog_by_location(), get_transcripts()

Examples

## Not run: 
get_neighbor_gene(pos = 1000000, chromosome = "chr1", bp_window = 10000)

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.