get_downloads_page_data: Get Downloads Page Data

In gtexr: Query the GTEx Portal API

Get Downloads Page Data

Description

Retrieves all the files belonging to the given project_id for display on the ⁠Downloads Page⁠

GTEx Portal API documentation

Usage

get_downloads_page_data(project_id = "adult-gtex")

Arguments

project_id

String. Options: "gtex", "adult-gtex", "egtex".

Details

Note: The GTEx Portal API documentation states "GTEx currently has one project available: gtex". However, project_id values "adult-gtex" and "egtex" both return results, whereas "gtex" does not (see examples).

Value

A Tibble

See Also

Other Datasets Endpoints: get_annotation(), get_collapsed_gene_model_exon(), get_file_list(), get_full_get_collapsed_gene_model_exon(), get_functional_annotation(), get_linkage_disequilibrium_by_variant_data(), get_linkage_disequilibrium_data(), get_sample_datasets_endpoints(), get_subject(), get_tissue_site_detail(), get_variant(), get_variant_by_location()

Examples

## Not run: 
 # "adult-gtex" (default `project_id` value) and "egtex" both return results
 get_downloads_page_data()
 egtex <- get_downloads_page_data("egtex")
 egtex

 # ..."gtex" does not
 get_downloads_page_data("gtex")

 # get details for whole blood methylation data, including download URL
 purrr::pluck(
   egtex$children,
   1,
   "folders",
   "Methylation - EPIC Array",
   "children",
   "folders",
   "mQTLs",
   "children",
   "files",
   "WholeBlood.mQTLs.regular.txt.gz"
 )

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.