get_genomic_features: Get Genomic Features

In gtexr: Query the GTEx Portal API

Get Genomic Features

Description

GTEx API Portal documentation

Usage

get_genomic_features(.featureId, datasetId = "gtex_v8")

Arguments

.featureId	String. A genomic feature e.g. GENCODE ID, RSID or GTEx Variant ID.
datasetId	String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".

Details

This endpoint takes a path parameter "featureId".

Value

A tibble.

See Also

Other Reference Genome Endpoints: get_exons(), get_gene_search(), get_genes(), get_gwas_catalog_by_location(), get_neighbor_gene(), get_transcripts()

Examples

## Not run: 
# gene symbol
get_genomic_features("brca1")

# GENCODE ID
get_genomic_features("ENSG00000132693.12")

# RSID
get_genomic_features("rs1815739")

# GTEx variant ID
get_genomic_features("chr11_66561023_G_GTTA_b38")

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.