get_median_junction_expression: Get Median Junction Expression

In gtexr: Query the GTEx Portal API

Get Median Junction Expression

Description

Find junction gene expression data.

• Returns median junction read counts in tissues of a given gene from all known transcripts.

• Results may be filtered by dataset or tissue.

By default, this service queries the latest GTEx release.

GTEx Portal API documentation

Usage

get_median_junction_expression(
  gencodeIds,
  datasetId = "gtex_v8",
  tissueSiteDetailIds = NULL,
  page = 0,
  itemsPerPage = 250
)

Arguments

gencodeIds	A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5").
datasetId	String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".
tissueSiteDetailIds	Character vector of IDs for tissues of interest. Can be GTEx specific IDs (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or Ontology IDs.
page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble.

See Also

Other Expression Data Endpoints: get_clustered_median_exon_expression(), get_clustered_median_gene_expression(), get_clustered_median_junction_expression(), get_clustered_median_transcript_expression(), get_expression_pca(), get_gene_expression(), get_median_exon_expression(), get_median_gene_expression(), get_median_transcript_expression(), get_single_nucleus_gex(), get_single_nucleus_gex_summary(), get_top_expressed_genes()

Examples

## Not run: 
get_median_junction_expression(gencodeIds = "ENSG00000132693.12")

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.