get_functional_annotation: Get Functional Annotation

View source: R/get_functional_annotation.R

get_functional_annotationR Documentation

Get Functional Annotation

Description

This endpoint retrieves the functional annotation of a certain chromosome location. Default to most recent dataset release.

GTEx Portal API documentation

Usage

get_functional_annotation(
  datasetId = "gtex_v8",
  chromosome,
  start,
  end,
  page = 0,
  itemsPerPage = 250
)

Arguments

datasetId

String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".

chromosome

String. One of "chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrM", "chrX", "chrY".

start

Integer.

end

Integer.

page

Integer (default = 0).

itemsPerPage

Integer (default = 250).

Value

A tibble

See Also

Other Datasets Endpoints: get_annotation(), get_collapsed_gene_model_exon(), get_downloads_page_data(), get_file_list(), get_full_get_collapsed_gene_model_exon(), get_linkage_disequilibrium_by_variant_data(), get_linkage_disequilibrium_data(), get_sample_datasets_endpoints(), get_subject(), get_tissue_site_detail(), get_variant(), get_variant_by_location()

Examples

## Not run: 
  get_functional_annotation(chromosome = "chr1", start = 192168000, end = 192169000)

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.