get_sqtl_genes: Get Sqtl Genes

In gtexr: Query the GTEx Portal API

Get Sqtl Genes

Description

Retrieve sGenes (sQTL Genes).

• This service returns sGenes (sQTL Genes) from the specified dataset.

• Results may be filtered by tissue.

• By default, the service queries the latest GTEx release.

The retrieved data is split into pages with items_per_page entries per page

GTEx Portal API documentation.

Usage

get_sqtl_genes(
  tissueSiteDetailId,
  datasetId = "gtex_v8",
  page = 0,
  itemsPerPage = 250
)

Arguments

tissueSiteDetailId	String. The ID of the tissue of interest. Can be a GTEx specific ID (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or an Ontology ID.
datasetId	String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".
page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble.

See Also

Other Static Association Endpoints: get_eqtl_genes(), get_fine_mapping(), get_independent_eqtl(), get_multi_tissue_eqtls(), get_significant_single_tissue_eqtls(), get_significant_single_tissue_eqtls_by_location(), get_significant_single_tissue_ieqtls(), get_significant_single_tissue_isqtls(), get_significant_single_tissue_sqtls()

Examples

## Not run: 
get_sqtl_genes("Whole_Blood")

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.