get_significant_single_tissue_ieqtls: Get Significant Single Tissue Ieqtls

In gtexr: Query the GTEx Portal API

Get Significant Single Tissue Ieqtls

Description

Retrieve Interaction eQTL Data.

• This service returns cell type interaction eQTLs (ieQTLs), from a specified dataset.

• Results may be filtered by tissue

• By default, the service queries the latest GTEx release.

The retrieved data is split into pages with items_per_page entries per page

GTEx Portal API documentation

Usage

get_significant_single_tissue_ieqtls(
  gencodeIds,
  variantIds = NULL,
  tissueSiteDetailIds = NULL,
  datasetId = "gtex_v8",
  page = 0,
  itemsPerPage = 250
)

Arguments

gencodeIds	A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5").
variantIds	Character vector. Gtex variant IDs.
tissueSiteDetailIds	Character vector of IDs for tissues of interest. Can be GTEx specific IDs (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or Ontology IDs.
datasetId	String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".
page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble

See Also

Other Static Association Endpoints: get_eqtl_genes(), get_fine_mapping(), get_independent_eqtl(), get_multi_tissue_eqtls(), get_significant_single_tissue_eqtls(), get_significant_single_tissue_eqtls_by_location(), get_significant_single_tissue_isqtls(), get_significant_single_tissue_sqtls(), get_sqtl_genes()

Examples

## Not run: 
get_significant_single_tissue_ieqtls(c("ENSG00000132693.12",
                                       "ENSG00000203782.5"))

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.