View source: R/get_independent_eqtl.R
get_independent_eqtl | R Documentation |
Retrieve Independent eQTL Data
Finds and returns Independent eQTL Data
data for the provided list of genes
By default, this endpoint fetches data from the latest GTEx
version
The retrieved data is split into pages with items_per_page
entries per page
get_independent_eqtl(
gencodeIds,
tissueSiteDetailIds = NULL,
datasetId = "gtex_v8",
page = 0,
itemsPerPage = 250
)
gencodeIds |
A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5"). |
tissueSiteDetailIds |
Character vector of IDs for tissues of interest.
Can be GTEx specific IDs (e.g. "Whole_Blood"; use
|
datasetId |
String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot". |
page |
Integer (default = 0). |
itemsPerPage |
Integer (default = 250). |
A tibble.
Other Static Association Endpoints:
get_eqtl_genes()
,
get_fine_mapping()
,
get_multi_tissue_eqtls()
,
get_significant_single_tissue_eqtls()
,
get_significant_single_tissue_eqtls_by_location()
,
get_significant_single_tissue_ieqtls()
,
get_significant_single_tissue_isqtls()
,
get_significant_single_tissue_sqtls()
,
get_sqtl_genes()
## Not run:
# search by gene
get_independent_eqtl(gencodeIds = c("ENSG00000132693.12",
"ENSG00000203782.5"))
# optionally filter for a single variant and/or one or more tissues
get_independent_eqtl(gencodeIds = c("ENSG00000132693.12",
"ENSG00000203782.5"),
tissueSiteDetailIds = c("Whole_Blood",
"Thyroid"))
## End(Not run)
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