get_tissue_site_detail: Get Tissue Site Detail

In gtexr: Query the GTEx Portal API

Get Tissue Site Detail

Description

Retrieve all tissue site detail information in the database

GTEx Portal API documentation

Usage

get_tissue_site_detail(page = 0, itemsPerPage = 250)

Arguments

page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble

See Also

Other Datasets Endpoints: get_annotation(), get_collapsed_gene_model_exon(), get_downloads_page_data(), get_file_list(), get_full_get_collapsed_gene_model_exon(), get_functional_annotation(), get_linkage_disequilibrium_by_variant_data(), get_linkage_disequilibrium_data(), get_sample_datasets_endpoints(), get_subject(), get_variant(), get_variant_by_location()

Examples

## Not run: 
  # returns a tibble with one row per tissue
  get_tissue_site_detail()

  # `eqtlSampleSummary` and `rnaSeqSampleSummary` are list columns
  bladder_site_details <- get_tissue_site_detail() |>
    dplyr::filter(tissueSiteDetailId == "Bladder")

  purrr::pluck(bladder_site_details, "eqtlSampleSummary", 1)

  purrr::pluck(bladder_site_details, "rnaSeqSampleSummary", 1)

## End(Not run)

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.