Files in ANTsX/ANTsRNet
Neural Networks for Medical Image Processing

.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.gitignore
.travis.yml
ANTsRNet.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
R/RcppExports.R R/applyDBPN4x.R R/attentionUtilities.R R/brainAge.R R/brainExtraction.R R/brainMraVesselSegmentation.R R/brainTumorSegmentation.R R/cerebellumMorphology.R R/chexnet.R R/claustrumSegmentation.R R/corticalThickness.R R/createAlexNetModel.R R/createAutoencoderModel.R R/createConvolutionalAutoencoderModel.R R/createCustomModel.R R/createCustomUnetModel.R R/createCycleGanModel.R R/createDeepBackProjectionNetworkModel.R R/createDeepConvolutionalGanModel.R R/createDeepDenoiseSuperResolutionModel.R R/createDenoisingAutoEncoderSuperResolutionModel.R R/createDenseModel.R R/createDenseNetModel.R R/createDenseUnetModel.R R/createExpandedSuperResolutionModel.R R/createGoogLeNetModel.R R/createImageSuperResolutionModel.R R/createImprovedWassersteinGanModel.R R/createInpaintingDeepFillModel.R R/createPartialConvolutionUnetModel.R R/createResNetModel.R R/createResNetSuperResolutionModel.R R/createResNetWithSpatialTransformerNetworkModel.R R/createResUnetModel.R R/createSimpleClassificationWithSpatialTransformerNetworkModel.R R/createSsd7Model.R R/createSsdModel.R R/createSuperResolutionGanModel.R R/createUnetModel.R R/createUpDownResNetSuperResolutionModel.R R/createVanillaGanModel.R R/createVggModel.R R/createWassersteinGanModel.R R/createWideResNetModel.R R/croppingAndPaddingUtilities.R R/customActivationLayers.R R/customConvolutionLayers.R R/customMetrics.R R/customNormalizationLayers.R R/dataAugmentation.R R/deepAtropos.R R/deepBackProjectionUtilities.R R/deepEmbeddedClusteringUtilities.R R/deepFlash.R R/denseUnetUtilities.R R/desikanKillianyTourvilleLabeling.R R/extractImagePatches.R R/gaussianDiffusionUtilities.R R/getANTsXNetData.R R/getPretrainedNetwork.R R/hippMapp3rSegmentation.R R/histogramWarpImageIntensities.R R/histology.R R/hypothalamusSegmentation.R R/inpainting.R R/lesionSegmentation.R R/lungExtraction.R R/lungSegmentation.R R/mixtureDensityUtilities.R R/mouse.R R/mriModalityClassification.R R/mriSuperResolution.R R/neuralTransferStyle.R R/preprocessImage.R R/qualityAssessment.R R/randomImageTransformAugmentation.R R/randomImageTransformBatchGenerator.R R/randomlyTransformImageData.R R/reconstructImageFromPatches.R R/regressionMatchImage.R R/resampleTensorUtilities.R R/simulateBiasField.R R/spatialTransformerNetworkUtilities.R R/ssdUtilities.R R/superResolutionUtilities.R R/unetUtilities.R R/utils-pipe.R R/uvaSeg.R R/whiteMatterHyperintensitySegmentation.R README.md
_pkgdown.yml
appveyor.yml
code_of_conduct.md
codecov.yml
docs/404.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/code_of_conduct.html
docs/docsearch.css
docs/docsearch.js
docs/figures/coreANTsXNetTools.png
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AnchorBoxLayer2D.html
docs/reference/AnchorBoxLayer3D.html
docs/reference/AttentionAugmentationLayer2D.html
docs/reference/AttentionLayer2D.html
docs/reference/AttentionLayer3D.html
docs/reference/BilinearInterpolationLayer2D.html
docs/reference/ClusteringLayer.html
docs/reference/ContextualAttentionLayer2D.html
docs/reference/ContextualAttentionLayer3D.html
docs/reference/CycleGanModel.html
docs/reference/DeepConvolutionalGanModel.html
docs/reference/DeepEmbeddedClusteringModel.html
docs/reference/EfficientAttentionLayer2D.html
docs/reference/EfficientAttentionLayer3D.html
docs/reference/GMSD.html
docs/reference/GaussianDiffusion.html
docs/reference/ImprovedWassersteinGanModel.html
docs/reference/InstanceNormalizationLayer.html
docs/reference/L2NormalizationLayer2D.html
docs/reference/L2NormalizationLayer3D.html
docs/reference/LogSoftmaxLayer.html
docs/reference/LossSSD.html
docs/reference/MAE.html
docs/reference/MSE.html
docs/reference/MixtureDensityNetworkLayer.html
docs/reference/PSNR.html
docs/reference/PartialConv2DLayer.html
docs/reference/PartialConv3DLayer.html
docs/reference/ResampleTensorLayer.html
docs/reference/ResampleTensorLayer2D.html
docs/reference/ResampleTensorLayer3D.html
docs/reference/ResampleTensorToTargetTensorLayer2D.html
docs/reference/ResampleTensorToTargetTensorLayer3D.html
docs/reference/ResizeTensorLayer.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/SSIM.html
docs/reference/ScaleLayer.html
docs/reference/SpatialTransformerLayer2D.html
docs/reference/SpatialTransformerLayer3D.html
docs/reference/SuperResolutionGanModel.html
docs/reference/TrilinearInterpolationLayer2D.html
docs/reference/TrilinearInterpolationLayer3D.html
docs/reference/VanillaGanModel.html
docs/reference/WassersteinGanModel.html
docs/reference/activation_elu_plus_one_plus_epsilon.html
docs/reference/allenE13x5BrainExtraction.html
docs/reference/allenEx5BrainExtraction.html
docs/reference/allenHistologyBrainMask.html
docs/reference/applyDBPNsr.html
docs/reference/applyDeepBackProjectionModel.html
docs/reference/applySuperResolutionModel-1.png
docs/reference/applySuperResolutionModel-2.png
docs/reference/applySuperResolutionModel-3.png
docs/reference/applySuperResolutionModel.html
docs/reference/applySuperResolutionModelPatch.html
docs/reference/applySuperResolutionModelToImage.html
docs/reference/arterialLesionSegmentation.html
docs/reference/basisWarp.html
docs/reference/binary_dice_coefficient.html
docs/reference/binary_surface_loss.html
docs/reference/brainAge.html
docs/reference/brainAgeFmrib.html
docs/reference/brainExtraction.html
docs/reference/brainTumorSegmentation.html
docs/reference/categorical_focal_gain.html
docs/reference/categorical_focal_loss.html
docs/reference/cerebellumMorphology.html
docs/reference/checkXrayLungOrientation.html
docs/reference/chexnet.html
docs/reference/claustrumSegmentation.html
docs/reference/convOutputLength.html
docs/reference/convertCoordinates.html
docs/reference/corticalThickness.html
docs/reference/createAlexNetModel2D.html
docs/reference/createAlexNetModel3D.html
docs/reference/createAutoencoderModel.html
docs/reference/createConvolutionalAutoencoderModel2D.html
docs/reference/createConvolutionalAutoencoderModel3D.html
docs/reference/createDeepBackProjectionNetworkModel2D.html
docs/reference/createDeepBackProjectionNetworkModel3D.html
docs/reference/createDeepDenoiseSuperResolutionModel2D.html
docs/reference/createDeepDenoiseSuperResolutionModel3D.html
docs/reference/createDenoisingAutoEncoderSuperResolutionModel2D.html
docs/reference/createDenoisingAutoEncoderSuperResolutionModel3D.html
docs/reference/createDenseModel.html
docs/reference/createDenseNetModel2D.html
docs/reference/createDenseNetModel3D.html
docs/reference/createDenseUnetModel2D.html
docs/reference/createDenseUnetModel3D.html
docs/reference/createEnhancedDeepSuperResolutionModel2D.html
docs/reference/createExpandedSuperResolutionModel2D.html
docs/reference/createExpandedSuperResolutionModel3D.html
docs/reference/createFullyConvolutionalVggModel2D.html
docs/reference/createFullyConvolutionalVggModel3D.html
docs/reference/createGoogLeNetModel2D.html
docs/reference/createHippMapp3rUnetModel3D.html
docs/reference/createHyperMapp3rUnetModel3D.html
docs/reference/createHypothalamusUnetModel3D.html
docs/reference/createImageSuperResolutionModel2D.html
docs/reference/createImageSuperResolutionModel3D.html
docs/reference/createLiWmhUnetModel2D.html
docs/reference/createNoBrainerUnetModel3D.html
docs/reference/createPartialConvolutionUnetModel2D.html
docs/reference/createPartialConvolutionUnetModel3D.html
docs/reference/createResNetModel2D.html
docs/reference/createResNetModel3D.html
docs/reference/createResNetSuperResolutionModel2D.html
docs/reference/createResNetSuperResolutionModel3D.html
docs/reference/createResNetWithSpatialTransformerNetworkModel2D.html
docs/reference/createResNetWithSpatialTransformerNetworkModel3D.html
docs/reference/createResUnetModel2D.html
docs/reference/createResUnetModel3D.html
docs/reference/createSimpleClassificationWithSpatialTransformerNetworkModel2D.html
docs/reference/createSimpleClassificationWithSpatialTransformerNetworkModel3D.html
docs/reference/createSimpleFullyConvolutionalNeuralNetworkModel3D.html
docs/reference/createSpatialTransformNetwork2D.html
docs/reference/createSpatialTransformNetworkModel2D.html
docs/reference/createSpatialTransformNetworkModel3D.html
docs/reference/createSpatialTransformerNetworkModel2D.html
docs/reference/createSpatialTransformerNetworkModel3D.html
docs/reference/createSsd7Model2D.html
docs/reference/createSsd7Model3D.html
docs/reference/createSsdModel2D.html
docs/reference/createSsdModel3D.html
docs/reference/createSysuMediaUnetModel2D.html
docs/reference/createSysuMediaUnetModel3D.html
docs/reference/createUnetModel2D.html
docs/reference/createUnetModel3D.html
docs/reference/createUpDownResNetSuperResolutionModel2D.html
docs/reference/createVggModel2D.html
docs/reference/createVggModel3D.html
docs/reference/createWideResNetModel2D.html
docs/reference/createWideResNetModel3D.html
docs/reference/cropImageCenter.html
docs/reference/dataAugmentation.html
docs/reference/decodeSsd2D.html
docs/reference/decodeSsd3D.html
docs/reference/decodeUnet.html
docs/reference/deepAtropos.html
docs/reference/deepFlash.html
docs/reference/deepFlashDeprecated.html
docs/reference/desikanKillianyTourvilleLabeling.html
docs/reference/dktBasedLobarParcellation.html
docs/reference/drawRectangles-1.png
docs/reference/drawRectangles-2.png
docs/reference/drawRectangles.html
docs/reference/elBicho.html
docs/reference/encodeSsd2D.html
docs/reference/encodeSsd3D.html
docs/reference/encodeUnet.html
docs/reference/ewDavid.html
docs/reference/extractImagePatchCoordinates.html
docs/reference/extractImagePatches.html
docs/reference/getANTsXNetData.html
docs/reference/getMixtureDensityLossFunction.html
docs/reference/getMixtureDensityMseAccuracyFunction.html
docs/reference/getMixtureDensitySamplingFunction.html
docs/reference/getPretrainedNetwork.html
docs/reference/hippMapp3rSegmentation.html
docs/reference/histogramWarpImageIntensities.html
docs/reference/hyperMapp3rSegmentation.html
docs/reference/hypothalamusSegmentation.html
docs/reference/index.html
docs/reference/inpaintingDeepFillModel.html
docs/reference/jaccardSimilarity.html
docs/reference/layer_activation_log_softmax.html
docs/reference/layer_anchor_box_2d.html
docs/reference/layer_anchor_box_3d.html
docs/reference/layer_attention_2d.html
docs/reference/layer_attention_3d.html
docs/reference/layer_attention_augmentation_2d.html
docs/reference/layer_attention_augmented_convolution_block_2d.html
docs/reference/layer_contextual_attention_2d.html
docs/reference/layer_contextual_attention_3d.html
docs/reference/layer_efficient_attention_2d.html
docs/reference/layer_efficient_attention_3d.html
docs/reference/layer_instance_normalization.html
docs/reference/layer_l2_normalization_2d.html
docs/reference/layer_mixture_density.html
docs/reference/layer_partial_conv_2d.html
docs/reference/layer_partial_conv_3d.html
docs/reference/layer_resample_tensor_2d.html
docs/reference/layer_resample_tensor_3d.html
docs/reference/layer_resample_tensor_to_target_tensor_2d.html
docs/reference/layer_resample_tensor_to_target_tensor_3d.html
docs/reference/layer_spatial_transformer_2d.html
docs/reference/layer_spatial_transformer_3d.html
docs/reference/linMatchIntensity.html
docs/reference/longitudinalCorticalThickness.html
docs/reference/loss_multilabel_dice_coefficient_error.html
docs/reference/loss_peak_signal_to_noise_ratio_error.html
docs/reference/loss_pearson_correlation_coefficient_error.html
docs/reference/lungExtraction.html
docs/reference/lungPulmonaryArterySegmentation.html
docs/reference/masked_mse_error.html
docs/reference/maximum_mean_discrepancy.html
docs/reference/mixture_density_network_softmax.html
docs/reference/mriModalityClassification.html
docs/reference/mriSuperResolution.html
docs/reference/multilabel_dice_coefficient.html
docs/reference/multilabel_surface_loss.html
docs/reference/neuralStyleTransfer.html
docs/reference/noBrainerBrainExtraction.html
docs/reference/padImageByFactor.html
docs/reference/padOrCropImageToSize.html
docs/reference/peak_signal_to_noise_ratio.html
docs/reference/pearson_correlation_coefficient.html
docs/reference/pipe.html
docs/reference/preprocessBrainImage.html
docs/reference/randomImageTransformAugmentation.html
docs/reference/randomImageTransformBatchGenerator.html
docs/reference/randomImageTransformParametersAugmentation.html
docs/reference/randomImageTransformParametersBatchGenerator.html
docs/reference/randomlyTransformImageData.html
docs/reference/reconstructImageFromPatches.html
docs/reference/regressionMatchImage.html
docs/reference/resampleTensor.html
docs/reference/resampleTensorLike.html
docs/reference/sampleFromCategoricalDistribution.html
docs/reference/sampleFromOutput.html
docs/reference/simulateBiasField.html
docs/reference/softmax.html
docs/reference/splitMixtureParameters.html
docs/reference/sysuMediaWmhSegmentation.html
docs/reference/tidNeuralImageAssessment.html
docs/reference/tidsQualityAssessment.html
docs/reference/uvaSeg.html
docs/reference/uvaSegTrain.html
docs/reference/weighted_categorical_crossentropy.html
docs/reference/wholeHeadInpainting.html
docs/reference/wmhSegmentation.html
index.html
inst/CITATION
inst/extdata/empty.txt
man/AnchorBoxLayer2D.Rd man/AnchorBoxLayer3D.Rd man/AttentionAugmentationLayer2D.Rd man/AttentionLayer2D.Rd man/AttentionLayer3D.Rd man/ClusteringLayer.Rd man/ContextualAttentionLayer2D.Rd man/ContextualAttentionLayer3D.Rd man/CycleGanModel.Rd man/DeepConvolutionalGanModel.Rd man/DeepEmbeddedClusteringModel.Rd man/EfficientAttentionLayer2D.Rd man/EfficientAttentionLayer3D.Rd man/GMSD.Rd man/GaussianDiffusion.Rd man/ImprovedWassersteinGanModel.Rd man/InpaintingDeepFillModel.Rd man/InstanceNormalizationLayer.Rd man/L2NormalizationLayer2D.Rd man/L2NormalizationLayer3D.Rd man/LogSoftmaxLayer.Rd man/LossSSD.Rd man/MAE.Rd man/MSE.Rd man/MixtureDensityNetworkLayer.Rd man/PSNR.Rd man/PartialConv2DLayer.Rd man/PartialConv3DLayer.Rd man/ResampleTensorLayer2D.Rd man/ResampleTensorLayer3D.Rd man/ResampleTensorToTargetTensorLayer2D.Rd man/ResampleTensorToTargetTensorLayer3D.Rd man/SSIM.Rd man/ScaleLayer.Rd man/SpatialTransformerLayer2D.Rd man/SpatialTransformerLayer3D.Rd man/SuperResolutionGanModel.Rd man/VanillaGanModel.Rd man/WassersteinGanModel.Rd man/applyDeepBackProjectionModel.Rd man/applySuperResolutionModel.Rd man/applySuperResolutionModelPatch.Rd man/applySuperResolutionModelToImage.Rd man/arterialLesionSegmentation.Rd man/basisWarp.Rd man/binary_dice_coefficient.Rd man/binary_surface_loss.Rd man/brainAge.Rd man/brainExtraction.Rd man/brainMraVesselSegmentation.Rd man/brainTumorSegmentation.Rd man/categorical_focal_gain.Rd man/categorical_focal_loss.Rd man/cerebellumMorphology.Rd man/checkXrayLungOrientation.Rd man/chexnet.Rd man/claustrumSegmentation.Rd man/convOutputLength.Rd man/convertCoordinates.Rd man/corticalThickness.Rd man/createAlexNetModel2D.Rd man/createAlexNetModel3D.Rd man/createAutoencoderModel.Rd man/createConvolutionalAutoencoderModel2D.Rd man/createConvolutionalAutoencoderModel3D.Rd man/createDeepBackProjectionNetworkModel2D.Rd man/createDeepBackProjectionNetworkModel3D.Rd man/createDeepDenoiseSuperResolutionModel2D.Rd man/createDeepDenoiseSuperResolutionModel3D.Rd man/createDenoisingAutoEncoderSuperResolutionModel2D.Rd man/createDenoisingAutoEncoderSuperResolutionModel3D.Rd man/createDenseModel.Rd man/createDenseNetModel2D.Rd man/createDenseNetModel3D.Rd man/createDenseUnetModel2D.Rd man/createDenseUnetModel3D.Rd man/createEnhancedDeepSuperResolutionModel2D.Rd man/createExpandedSuperResolutionModel2D.Rd man/createExpandedSuperResolutionModel3D.Rd man/createFullyConvolutionalVggModel2D.Rd man/createFullyConvolutionalVggModel3D.Rd man/createGoogLeNetModel2D.Rd man/createHippMapp3rUnetModel3D.Rd man/createHyperMapp3rUnetModel3D.Rd man/createHypothalamusUnetModel3D.Rd man/createImageSuperResolutionModel2D.Rd man/createImageSuperResolutionModel3D.Rd man/createNoBrainerUnetModel3D.Rd man/createPartialConvolutionUnetModel2D.Rd man/createPartialConvolutionUnetModel3D.Rd man/createResNetModel2D.Rd man/createResNetModel3D.Rd man/createResNetSuperResolutionModel2D.Rd man/createResNetSuperResolutionModel3D.Rd man/createResNetWithSpatialTransformerNetworkModel2D.Rd man/createResNetWithSpatialTransformerNetworkModel3D.Rd man/createResUnetModel2D.Rd man/createResUnetModel3D.Rd man/createRmnetGenerator.Rd man/createShivaUnetModel3D.Rd man/createSimpleClassificationWithSpatialTransformerNetworkModel2D.Rd man/createSimpleClassificationWithSpatialTransformerNetworkModel3D.Rd man/createSimpleFullyConvolutionalNeuralNetworkModel3D.Rd man/createSsd7Model2D.Rd man/createSsd7Model3D.Rd man/createSsdModel2D.Rd man/createSsdModel3D.Rd man/createSysuMediaUnetModel2D.Rd man/createSysuMediaUnetModel3D.Rd man/createUnetModel2D.Rd man/createUnetModel3D.Rd man/createVggModel2D.Rd man/createVggModel3D.Rd man/createWideResNetModel2D.Rd man/createWideResNetModel3D.Rd man/cropImageCenter.Rd man/dataAugmentation.Rd man/decodeSsd2D.Rd man/decodeSsd3D.Rd man/decodeUnet.Rd man/deepAtropos.Rd man/deepFlash.Rd man/desikanKillianyTourvilleLabeling.Rd man/drawRectangles.Rd man/elBicho.Rd man/encodeSsd2D.Rd man/encodeSsd3D.Rd man/encodeUnet.Rd man/extractImagePatchCoordinates.Rd man/extractImagePatches.Rd man/getANTsXNetData.Rd man/getAntsxnetCacheDirectory.Rd man/getMixtureDensityLossFunction.Rd man/getMixtureDensityMseAccuracyFunction.Rd man/getMixtureDensitySamplingFunction.Rd man/getPretrainedNetwork.Rd man/hippMapp3rSegmentation.Rd man/histogramWarpImageIntensities.Rd man/hyperMapp3rSegmentation.Rd man/hypothalamusSegmentation.Rd man/jaccardSimilarity.Rd man/layer_activation_log_softmax.Rd man/layer_anchor_box_2d.Rd man/layer_attention_2d.Rd man/layer_attention_3d.Rd man/layer_attention_augmentation_2d.Rd man/layer_attention_augmented_convolution_block_2d.Rd man/layer_contextual_attention_2d.Rd man/layer_efficient_attention_2d.Rd man/layer_efficient_attention_3d.Rd man/layer_instance_normalization.Rd man/layer_l2_normalization_2d.Rd man/layer_mixture_density.Rd man/layer_partial_conv_2d.Rd man/layer_partial_conv_3d.Rd man/layer_resample_tensor_2d.Rd man/layer_resample_tensor_3d.Rd man/layer_resample_tensor_to_target_tensor_2d.Rd man/layer_resample_tensor_to_target_tensor_3d.Rd man/layer_spatial_transformer_2d.Rd man/lesionSegmentation.Rd man/linMatchIntensity.Rd man/longitudinalCorticalThickness.Rd man/lungAirwaySegmentation.Rd man/lungExtraction.Rd man/lungPulmonaryArterySegmentation.Rd man/masked_mse_error.Rd man/maximum_mean_discrepancy.Rd man/mixture_density_network_softmax.Rd man/mouseBrainExtraction.Rd man/mouseBrainParcellation.Rd man/mouseCorticalThickness.Rd man/mriModalityClassification.Rd man/mriSuperResolution.Rd man/multilabel_dice_coefficient.Rd man/neuralStyleTransfer.Rd man/padImageByFactor.Rd man/padOrCropImageToSize.Rd man/peak_signal_to_noise_ratio.Rd man/pearson_correlation_coefficient.Rd man/pipe.Rd man/preprocessBrainImage.Rd man/randomImageTransformAugmentation.Rd man/randomImageTransformBatchGenerator.Rd man/randomImageTransformParametersAugmentation.Rd man/randomImageTransformParametersBatchGenerator.Rd man/randomlyTransformImageData.Rd man/reconstructImageFromPatches.Rd man/regressionMatchImage.Rd man/sampleFromCategoricalDistribution.Rd man/sampleFromOutput.Rd man/setAntsxnetCacheDirectory.Rd man/shivaPvsSegmentation.Rd man/shivaWmhSegmentation.Rd man/simulateBiasField.Rd man/splitMixtureParameters.Rd man/sysuMediaWmhSegmentation.Rd man/tidNeuralImageAssessment.Rd man/uvaSeg.Rd man/uvaSegTrain.Rd man/weighted_categorical_crossentropy.Rd man/wholeHeadInpainting.Rd man/wmhSegmentation.Rd
requirements.txt
tests/testthat.R tests/testthat/test-alexNetModel.R tests/testthat/test-alexNetModel3D.R tests/testthat/test-pretrained.R
ANTsX/ANTsRNet documentation built on Nov. 21, 2024, 4:07 a.m.