ClusterCODEX.internal: Perform louvain clustering on CODEX data Takes matrices and...
In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring
ClusterCODEX.internal R Documentation
Perform louvain clustering on CODEX data
Takes matrices and data frames instead of STvEA.data class
Description
Perform louvain clustering on CODEX data
Takes matrices and data frames instead of STvEA.data class
Usage
ClusterCODEX.internal(codex_knn, k = ncol(codex_knn))
Arguments
codex_knn
matrix of (codex cells x k) nearest neighbor indices
in the CODEX protein space
k
number of nearest neighbors to use in graph-based clustering
CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.
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| ClusterCODEX.internal | R Documentation |
Perform louvain clustering on CODEX data Takes matrices and data frames instead of STvEA.data class
Description
Perform louvain clustering on CODEX data Takes matrices and data frames instead of STvEA.data class
Usage
ClusterCODEX.internal(codex_knn, k = ncol(codex_knn))
Arguments
codex_knn |
matrix of (codex cells x k) nearest neighbor indices in the CODEX protein space |
k |
number of nearest neighbors to use in graph-based clustering |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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