AdjScoreHeatmap: Visualize heatmap of Adjacency Score run on all combinations...

In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

Visualize heatmap of Adjacency Score run on all combinations of feature pairs

Description

Visualize heatmap of Adjacency Score run on all combinations of feature pairs

Usage

AdjScoreHeatmap(adj_score_output, scaling = 1e-10, style = "heatmap")

Arguments

adj_score_output	output of any of the AdjScore functions - a matrix where each row contains the features in a pair and their Adjacency Score and q values
scaling	scaling factor applied in the visualization of q-values. The q-value are transformed according to -log10(scaling + q-value)
style	plotting style for the heatmap, to choose between "heatmap" (default) and "pheatmap"

CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.