FilterCITEmRNA: Filter CITE-seq mRNA data based on number of transcripts per...

View source: R/data_processing.R

FilterCITEmRNAR Documentation

Filter CITE-seq mRNA data based on number of transcripts per cell and the number of cells each gene is expressed in

Description

Filter CITE-seq mRNA data based on number of transcripts per cell and the number of cells each gene is expressed in

Usage

FilterCITEmRNA(stvea_object, min_transcripts = 1200, min_cells_per_gene = 30)

Arguments

stvea_object

STvEA.data class with CITE-seq mRNA data

min_transcripts

minimum number of transcripts to keep cell

min_cells_per_gene

minimum number of cells a gene must be


CamaraLab/STvEA documentation built on March 27, 2024, 8:58 a.m.