GetTransferMatrix | R Documentation |
Gets NN matrix for CITE->CODEX, stores in STvEA.data
GetTransferMatrix(
stvea_object,
k.cite = floor(nrow(stvea_object@corrected_codex) * 0.002),
c.cite = 0.1,
transfer.rna = TRUE,
fastknn = FALSE
)
stvea_object |
STvEA.data class with mapping correction run |
k.cite |
number of nearest CODEX neighbors to find for each CITE-seq cell |
c.cite |
width of Gaussian kernel in CITE-seq dataset |
fastknn |
if set to TRUE, skips the computation of the NN matrix and uses the FastKNN library to transfer the CITE-seq labels into the CODEX data |
transfer_rna |
if set to TRUE (default), also transfers the mRNA data from CITE-seq to CODEX. Requires extra memory |
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